PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.X1DZZ
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 578aa    MW: 65229.1 Da    PI: 6.2581
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.X1DZZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.2e-14404450455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h   ErrRR+++N++f +Lr+++P+      +K +K++iL  A+eY+++L+
  Araip.X1DZZ 404 NHVLSERRRRAKLNERFLTLRSMVPSI-----TKDDKVSILDDAIEYLRKLE 450
                  78999*********************7.....6****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-507184IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.28E-14403454No hitNo description
SuperFamilySSF474597.33E-18403466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-18404466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-12404450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-14406455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MLTENFKEQL ALSVRSIQWS YAIFWSTSST QPGVLSWGEG YYNGDIKTRK TSQGVELNSD  60
QIGLQRSEQL RELYKSLKTV EASPQTKRPS AALSPEDLTD TEWYYLVCMS FVFNIGQGLP  120
GKALAKGEPI WLCDAPSSDC RDFSRCLLAK TVVCFPFMDG VIELGTTDHV SEDLSLIQQI  180
RTSFLDILDV GVHNVHGAFN VKQSQEVGGA LISITSPNNS SNAFQANQPP DETLMVERIN  240
NGTSQVQSWQ IMDDELSNAV HNSSDCVSQT LHSPENVASL PKGENLTDSA KDLQKCNNSK  300
MTLVDPRSDD WHYQMVLSTL LKSSDQLIMG MHFQNFHQES SFSSWKKAGS VSYQRPRTGG  360
SSQALLKKVL FEVPRMHLDG ILEYQEENDF KEAVRTEADE NGMNHVLSER RRRAKLNERF  420
LTLRSMVPSI TKDDKVSILD DAIEYLRKLE KRIKELEAHK DLTDREARTK RSPQDMVERT  480
SDNYFNKTDN GTKSMAKKRK SRDIDDTRPE INSESLLKGS STNDVAVNIN EXLWKQLAVS  540
TWNHLFGFNC TSSPMLTEPT IVSAKRIKQT LQNVAFKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-151918424192Transcription factor MYC3
4rqw_B6e-151918424192Transcription factor MYC3
4rs9_A6e-151918424192Transcription factor MYC3
4yz6_A6e-151918424192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1468475TKRSPQDM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189511.10.0PREDICTED: transcription factor GLABRA 3
SwissprotQ9FN691e-157GL3_ARATH; Transcription factor GLABRA 3
TrEMBLA0A151TF170.0A0A151TF17_CAJCA; Transcription factor GLABRA 3 (Fragment)
STRINGGLYMA08G01810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-159bHLH family protein